Palyul Thubten Shedrub Chökhor Dargye Ling was established at the sacred site of Bodhgaya following the instructions of the third head of the Nyingma tradition, Kyabje Drubwang Pednor Rinpoche. Under the responsibility of Chogtrul Gyangkhang Rinpoche, construction began in 2008 and was completed with all sacred objects in 2015. The sixth head of the Nyingma tradition, Kyabje Taklung Tsetrul Rinpoche, performed the consecration ceremony and installed the golden pinnacle. Additionally, Kyabje Thubten Palzang Rinpoche, Kyabje Yangthang Rinpoche, and Chogtrul Gyangkhang Rinpoche performed inaugurations and consecrations.
In 2016, His Holiness the Dalai Lama graciously visited and performed a consecration ceremony. The monastery also received visits and consecrations from Gyalwang Karmapa Orgyen Trinley Dorje, holder of the practice lineage, and in 2017 from the Sakya throne holder Kyabgon Sakya Gongma Dagchen Rinpoche, master of the vast ocean of Khon lineage teachings. Currently, the monastery has 9 monks and 1 nun.